Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp407 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in term...re is a quick guide to benchmarking a Perl module using the B...ty of your Perl module. This program should take the form of...'MyModule' => \&benchmark_my_module, }); Analy...425 days ago
Comment on "A quick guide to Phred scaling"
Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is...xample, a Phred score of 20 corresponds to a probability of e...ing is a logarithmic system for representing the quality scor...425 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St...ol for short-read assembly. Here are the general steps for sh...d, "forward_reads.fastq" and "reverse_reads.fastq" are the fo...425 days ago
425 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl425 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...env You can check using which perl - it should give you the perl that's located within your c...his case, it should install things into your conda-directory. When you in...be extra-sure, you can also install most Perl packages via conda. Replace...425 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/428 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can a...cial website (http://cab.spbu.ru/software/spades/). It is ava...erminal and navigate to the directory where the input data is...s adjusting the k-mer length or enabling error correction. Th...430 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. T...ioPython: This is a Python library that provides several tool...tool depends on the specific requirements of the user, inclu...430 days ago