3947 days ago
3945 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...rvice to test for over-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software - a list of software packages, both commercial and open-sou...3778 days ago
List of bioinformatics open source projects/software.
...https://cabig-stage.nci.nih.gov/community/tools/caArray ontologic representation environment EMBOSS http://emboss.sourceforge.net/ Suite of packages for sequencing, searching, et...3756 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...tmlHapSim A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients http://cran.r-project.org/web/packages/hapsim/index.htmlHAPSIMU A pr...3736 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of pr...3743 days ago
Next generation sequencing in R or bioconductor environment
...many other sequence analysis packages. Documentation IRanges...port for many more high-level packages like GenomicRanges, ShortRead...sed genome sequence. BSgenome packages exist for many common genomes...combines a variety of HT-Seq packages to a pipeline for ChIP-Seq da...3624 days ago
3495 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softwa...3242 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ion: Improved Bayesian inversion somatic caller; unlike other software packages, treats effects fully probabi...se-Control Rare Variant Analysis Tool and Quantitative Trait; software packages for large-scale analysis of r...2908 days ago