Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographic...905 days ago
Illumina based assembly pipeline steps !
...dapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant call...(picard, SAMtools) Genome-wide and amplicon coverage QC plots (mosdepth) Choice...Individual variant screenshots with annotation tracks (ASCIIGenome) Interse...891 days ago
Useful Bioinformatics Analysis Tools !
...l; Deorowicz, S., Grabowski, Sz., Compression...- a space-saving solution for raw sequencing data, Bioinf...sp;Deorowicz, S., Kokot, M., Grabowski, Sz., Debudaj-Grabysz,... Deorowicz, S., Debudaj-Grabysz, A., Gudys, A., Grabowski...877 days ago
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List of comparative genomics resources !
...-species data comparison and transfer of information A multi-...eanEST -- the cleansed EST libraries database A novel databas...Colors -- annotation and comparative genomics of prokaryotes m...mon is a web server that integrates a selected suite of more t...691 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
.... The genetical theory of natural selection. Oxford Univer...anitz W. 1942 Genetics of natural populations VII The allelis...An expanded view of complex traits: from polygenic to omnigen...ature. Kin Selection, Cooperation, and Conflict 1. Hamilto...691 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
.../ccl.northwestern.edu/netlogo/models/Mimicry Camouflage practical https://alexis-catherine.github.io/publication/natural-selection-and-camouflage/ (...ee also https://cartwrig.ht/apps/redlynx/ https://demonstrations.wolfram.com/ReplicatorMu...691 days ago
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Understanding DUMP files from NCBI Taxonomy database !
...from GenBank taxonomy database General information. Field terminat...n GenBank taxonomy database rank -- rank of this node (super...-- GenBank division code (three characters) division name -- e.g....and authors). -- The following characters are escaped in this text...674 days ago
Useful link to teach evolution !
.../ccl.northwestern.edu/netlogo/models/Mimicry Camouflage practical https://alexis-catherine.github.io/publication/natural-selection-and-camouflage/ (...ee also https://cartwrig.ht/apps/redlynx/ https://demonstrations.wolfram.com/ReplicatorMu...592 days ago