Bioinformatics in Africa:- Part 1
...;Bioinformatics pole are: • Encourage the access to innovations i...p;the innovation. • Start training researchers to...p;the bioinformatics in the training programs of&nb...1204 days ago
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Special Nucleotide Characters / Symbols !
Nucleotide symbols Nucleotide symbol Full Name A Adenine C Cytosine G Guanine T Thymine U Uracil R Guanine / Adenine (purine) Y Cyt...884 days ago
Short-read assembly using Spades !
...reads -2 is input file of reverse reads --careful minimizes mismatches and short indels --cov-cutoff auto computes the coverage threshold (rather than the default setting,...839 days ago
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Tools for Geospatial data analysis !
...m, and Contextily, which allow you to create interactive maps and other visualiza...tion and analysis, such as Fiona, GeoPandas, and Rasterio, which allow you to man...d.in/dNG9fdkm RTree - https://lnkd.in/dURMiYpU Rasterio - https://lnkd.in/dEMC6...424 days ago
Bioinformatics tools for genome assembly !
...omes, as well as small eukaryotic genomes. ABySS: A parallelized assembler for large genomes that uses de Bruijn graphs. Velvet: Another de B...cular bacterial genome assembly. wtdbg2: A de Bruijn graph assembler for long reads, e...300 days ago
Steps to find all the repeats in the genome !
...mber of processors/threads you want to use for parallel processing. <divergen...Analyze the output: RepeatMasker will generate several output files, inclu...d repeat elements. Remember to adjust the parameters and options according t...262 days ago