Results for "RNA"
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RNA-Seq De novo Assembly Using Trinity
...construction of transcriptomes from RNA-seq data. Trinity combines th...ntially to process large volumes of RNA-seq reads. Trinity partitions...ike so: Inchworm assembles the RNA-seq data into the unique sequ...ing full-length transcripts for alternatively spliced isoforms, and t...2962 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript dis...h R/Bioconductor Clustering of large expression datasets (microarray or RNA-Seq) Microarray Basic a...2928 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...acterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functio...2927 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (i...spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but interest...2922 days ago
- ...ads. Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3&rsqu...ds start with a primer sequence. Poly-A tails are useful for pulling out RNA from your sample, but often y...
2911 days ago
- ...ort reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy exce...
2904 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an...cal transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can d...
2816 days ago
- ...ange of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised tr...nder that usually requires supervised training and uses information from RNA-Seq reads in the prediction s...
1948 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing...uence alignments and co-variation information.R4RNA is the R package powerin...customized figures and scripting. http://www.e-rna.org/r-chie/plot.cgi?eg=single
2800 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read...ifferent mappers, create differential gene (miRNA) expression profiles and clus...
2767 days ago
