3939 days ago
Phylogenetic for Bioinformatics
...en represents the phylogeny of organisms, i. e., the history of organismal lineages as they change through time.Every living organism contains DNA, RNA, and proteins. Closely relate...3938 days ago
Useful Links for Bioinformaticians
...orials/articles/riley/riley.html www.tulane.edu/~biochem/nolan/lectures/rna/intro.htm http://lenti.med.u...l DNA tutorial DNA from the beginning Central Dogma Glossary About RNA www.imsb.au.dk/~raybrown/...3122 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ntal design Statistical design and analysis of RNA sequencing data. Auer & D...genome Full-length transcriptome assembly from RNA-Seq data without a reference...o transcriptome assembly pipeline from stranded RNA-Seq reads. Martin et al, BMC...3771 days ago
List of bioinformatics open source projects/software.
...software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk h...nductor package for omics data analysis using a supra-hexagonal map Taverna workbench Tool for designing...3749 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ERS BEERS was designed to benchmark RNA-Seq alignment algorithms and...onstruct different isoforms and alternate splicing from RNA-Seq data...n of the experimental pipelines for RNA-Seq, employing a minimal set...p://www.ebi.ac.uk/projects/bargen/kernalPop A spatially explicit popu...3729 days ago
Next generation sequencing in R or bioconductor environment
...to various genome browsers and file formats (such as GFF). See the Small RNA Profiling exercise for an exa...obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as mo...3617 days ago
Commercial and public next-gen-seq (NGS) software
...ysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...g and Alignment Program) for mRNA and EST Sequences. Developed...ime to update this list. Alternate Base Calling Rolexa - R-bas...3511 days ago
3488 days ago
Software packages for next gen sequence analysis
...AP (Genomic Mapping and Alignment Program) for mRNA and EST Sequences. Developed...align Illumina reads against a range of Refseq RNA or NCBI genome builds for a n...32, Solaris and Mac * PolyBayesShort - A re-incarnation of the PolyBayes SNP disc...3234 days ago