Tags: Protein-protein, protein-DNA, RNA, docking, hybrid, algorithm, template-based, modeling, ab initio, docking
1416 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them with known TSSs from a public database. This pack...Tags: SEASTAR, Systematic, Evaluation, Alternative, STArt, site, RNA
1357 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly variable depth from RNA virus samples. We tested IVA on datasets from 140 sequenced samples from human immunodeficiency virus-1 or influenza-virus-infected people and demonstrated that IVA outperforms all oth...Tags: iva, virus, assembly, genome, RNA
1043 days ago
Tags: RNA, classification, Tools
541 days ago
swgis v2.0 : a seqword genomic island sniffer
swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 was tested on several eukaryotic species of different lineages. all identified genomic islands were deposited in t...Tags: swgis, modified, version, seqword, genomic, island, sniffer, HGT, rna, genome
2008 days ago
Tags: Corona, virus, China, Resources, CoVID, covid, china, genome, assembly, dna, rna, sequences, evolution, study, comparative, genomics
1455 days ago