Results for "RNA Seq"
Top-level pages
...tein interactions. Analysing sequence data: The primary data...classification with 70S, 30S RNAs established the separate kin...The SWISS–PROT protein sequence database and its supplem...2:185–219The Genome International Sequencing Consortium (...3962 days ago
Phylogenetic for Bioinformatics
...orphological, biochemical, and gene sequence data suggests that all o...Every living organism contains DNA, RNA, and proteins. Closely relate...ich is discovered through molecular sequencing data and morphological...bsp;http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/...3961 days ago
Bioinformatics Courses Around the World
...;one time only, 11th International School for Computer Sci...mes Bonfield, three-day courseSequencing Project Management Usi...rmation Sciences http://mrna.otago.ac.nz/Bioinfo/Bioinfo_t...bioinformatics: computational sequence analysis of biological m...3958 days ago
Useful Links for Bioinformaticians
....tulane.edu/~biochem/nolan/lectures/rna/intro.htm http://lenti.med.u...ng Central Dogma Glossary About RNA www.imsb.au.dk/~raybrown/...Search Tutorials An Overview of Sequence Comparison Algorithms in...about Protein Evolution Biological Sequences and Information BLAST...3145 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...stical design and analysis of RNA sequencing data. Auer & Doerg...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...sembly pipeline from stranded RNA-Seq reads. Martin et al, BMC...ery and genetic mapping using sequenced RAD markers. Baird et a...3794 days ago
List of bioinformatics open source projects/software.
...e.net/ Suite of packages for sequencing, searching, etc. Gagg...al genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk h...tool to analyze and edit DNA sequence files Integrated Genome...ng a supra-hexagonal map Taverna workbench Tool for designing...3771 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ERS was designed to benchmark RNA-Seq alignment algorithms and also...ct different isoforms and alternate splicing from RNA-Seq data http://cbil.upenn.edu/be...he experimental pipelines for RNA-Seq, employing a minimal set of p...l to generate data of related sequences along a given phylogeny...3752 days ago
Next generation sequencing in R or bioconductor environment
...with a Biostring based genome sequence. BSgenome packages exist...(such as GFF). See the Small RNA Profiling exercise for an exa...ind the nearest gene, exon, miRNA or custom features such as mo...ocumentation Additional ChIP-Seq Packages DiffBind: Documenta...3639 days ago
Commercial and public next-gen-seq (NGS) software
...analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...g and Alignment Program) for mRNA and EST Sequences. Developed by Thomas Wu...ads against a range of Refseq RNA or NCBI genome builds for a n...3533 days ago
- ...DBs and tools related with miRNA: miRNA Sequencing data analysis : h...http://starbase.sysu.edu.cn/ Sequencing based miRNA DB : ...com/ssa_mirnas_db_home.php miRNA prediction on UTRs : htt...html Idea of analysing miRNA Sequencing data : http://www.ill...
3510 days ago
