3022 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and repro...tein Families, GeneTrees and homologies for both protein-coding and non-coding RNA genes....3005 days ago
3004 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univer...uction of transcriptomes from RNA-seq data. Trinity combines th...y to process large volumes of RNA-seq reads. Trinity partitions...: Inchworm assembles the RNA-seq data into the unique sequ...ll-length transcripts for alternatively...2982 days ago
2945 days ago
2968 days ago
2948 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...computing environment Retrieving and storing sequencing files (your own d...files Visualizing data in a genome browser RNA-Seq De novo transcript dis...ng of large expression datasets (microarray or RNA-Seq) Microarray Basic analysis...2948 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or O...2931 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial...re pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and a...2947 days ago