Results for "RNA sequencing"
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YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise al...paced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Anoth...2938 days ago
- ...unwanted sequence from your high-throughput sequencing reads. Cleaning your...this way is often required: Reads from small-RNA sequencing contain the 3’ sequenci...nce. Poly-A tails are useful for pulling out RNA from your sample, but often you don&...
2927 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is...
2927 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...ntification of structural variation in a genome re-sequencing experiment. Hagfish requires...2919 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-s...mapping second and third-generation sequencing reads to a reference genome....ign reads generated by all the major sequencing technologies, including Illum...mappings for all the generated data (sequencing technologies, low-coverage an...2919 days ago
- ...ampy is a package for the mapping of short reads from illumina sequencing machines onto a refere...It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in t...
2919 days ago
- methylKit is an R package for DNA methylation...annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...It can also handle whole-genome bisulfite sequencing data if proper input format i...
2906 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to vi...onal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2896 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L....
2179 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then s...2179 days ago
