Software packages for next gen sequence analysis
...ptomics * ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and EL...From the Wold lab. * G-Mo.R-Se - G-Mo.R-Se is a method aimed at using RNA-Seq short reads to build de novo...3242 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizatio...assembly, variant detection, RNA-Seq, ChIP-Seq, Genome Browser, et...cing (NGS) workflows include: RNA-Seq, miRNA-Seq, ChIP-Seq, DNA-Seq...2908 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociati...2210 days ago
2868 days ago
Genome Assembly Tools and Software - PART1 !!
...Novo Transcriptome Assembly from RNA-seq Data BinPacker is a novel...e Assembly pipeline from stranded RNA-Seq reads Comprehensive annota...m targeted gene assembly for both RNA-Seq and metagenomic data. It addr...criptome assembler that assembles RNA-seq reads into transcripts. SSP a...2685 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which so...2461 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ipt abundance quantification from RNA-seq data (uses pseudoalignment fo...nces from reference sequences and RNA-seq data (k-mer based) Software...e expression of transcripts using RNA-seq data (uses k-mers) http...gene k-mers profiles of the RNA-seq paired-end reads Software (J...2370 days ago
2350 days ago
Single Cell RNAseq data analysis tutorial !!
...orkflow for low-level analysis of single-cell RNA-seq data A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor SCell...e latent-factor models applied to single-cell RNA-seq data separate biological driv...2350 days ago
2350 days ago