Results for "Ra"
Top-level pages
Phylogenetic & Molecular Genetics Terms and Definitions
...assification -- The orderly arrangement of organisms in hierar...is). character -- Heritable trait possessed by an organism....are not closely related. Contrast with homology. crown...lp resolve the polarity of characters, and which is hypothesiz...2455 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantificati...m RNA-seq quantification at transcript-level (partitions the...rix's Genome-Wide Human SNP Array) from raw NGS reads (k-mer b...(e.g., ONT or PacBio reads, draft genomes) Software (Perl)...https://ccb.jhu.edu/software/kraken/ LMAT Assignment of taxo...2364 days ago
- ...des was used to produce the B fragilis assembly by Mick Wa...interlaced reads for paired-end library number <#> (<#>...ith reverse reads for paired-end library number <#> (<#>...reads for high-quality mate-pair library number <#> (<#>...
2344 days ago
Single Cell RNAseq data analysis tutorial !!
...input cells Useful for comparative transcriptomics, e.g.&nbs...nt studies, complex tissues (brain) Does not provid...ithub.com/nghiavtr/BPSC Sincera: A Computational Pipeline for.../SCOUP scLVM is a modelling framework for single-cell RNA-seq...2344 days ago
- ...rol, read alignment, quantification of gene and transcript levels, visualization,...n detection and eQTL mapping. A survey of best practices for RNA-seq data analys...ial with an example RNA-Seq Analysis Workflow Transcript-level expression analy...
2344 days ago
Edit distance application in bioinformatics !
...erent set of allowable edit operations. For instance, the Damerau–Levenshtein distance&n...sition of two adjacent characters; the longest commo...\@SEQ1, \@SEQ2 ); # ref to array my $lcss_string = LCSS...ter than this module. The Damerau-Levenshtein edit distance is...2334 days ago
Converting BLAST output into CSV
...ing with all this BLAST output. Generally, that’s the case - y...ST, or something. As with most programs that run on UNIX, the text...in some specific format. If the program is popular enough, there wil...hat using the ‘git’ program: git clone https://gith...2330 days ago
Tools for bacterial whole genome annotation
RAST – Web tool...information is not as good as RAST, and you will need sev...l genome units such as structural RNAs, tRNAs, small RNAs, pse...ON is available under GNU General Public License version 3.0 a...tion. It was validated on 18 oral streptococcal strains to pro...2325 days ago
Run miniasm assembler on nanopore reads !
... minimap) as input and outputs an assembly graph in the GFA format...ply concatenates pieces of read sequences to generate the final unitig ...$1}'| sort|uniq > invertedrepeat.list Generated a few palindrome and repea...2323 days ago
Bioinformatics Web Application Development with Perl
...evelopment has moved from generating static HTML to both clien...lt in Perl. Modern Perl Web Frameworks While the old wave of...e of the modern top Perl web frameworks, yet it retains its fl...DBIx::Class, it's often measurably faster. NoSQL on the CPAN...2315 days ago
