Results for "Ra"
Bio-Scripts
...pts export AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config #run BUSCO python BUSCO.py -i /media/urbe/MyDDrive/longMIRA_canuCorrect_sspaceLong/GRAAL_Haploid/adineta_p_lvl6/geno...2147 days ago
Long reads mapper bash script !
...cation of the tools samtools=/home/urbe/anaconda3/bin/samtools graphMapLoc=/home/urbe/Tools/graphmap/bin/Linux-x64/graphmap...ease specify reads type: ont, pacbio" fi elif [ $toolName == "graphmap" ]; then echo "Mappi...2132 days ago
- ...an.fastq --pairs_together --PARALLEL_STATS Converting input...reads discarded as likely aberrant based on coverage profiles....seq-Trinity-v2.6.6/Chrysalis/GraphFromFasta -i /home/urbe/Tool...-v2.6.6/trinity-plugins/BIN/ParaFly -c recursive_trinity.cmds...
2137 days ago
- ...le Table name within cSRA object, default is...Sequence data may be used in raw form or...Dump each read into separate file.Files...translation -B|--dumpbase...
2136 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2135 days ago
- ...ityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrat...CRIPTION: Analyse a de-novo transcriptome assembly using thre...comma-separated --reference=...assport/BorisTrinityAssembly/transrateSTAT/Trinity [ INFO] 20...
2133 days ago
- .../download"} # the sample names are dictionary keys in sample_links. extract them to a list we can use b...et al, 2016 study rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz", sample...
1526 days ago
Installing Porechop on Ubuntu !
...fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o...ld/lib/porechop/cpp_function_wrappers.py -> /home/urbe/anacond..._SIZE] [--extra_end_trim EXTRA_END_TRIM]...(default: 4) --extra_end_trim EXTRA_END_TRIM...2116 days ago
- ...adinetaGapFilled.gapfilled.iteration1.fa" echo "[REAPR pipe...adinetaGapFilled.gapfilled.iteration1.fa out.smaltmap.bam out....adinetaGapFilled.gapfilled.iteration1.fa out.smaltmap.bam out....adinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/Origi...
2109 days ago
- ...Requirement already satisfied: decorator>=4.1.0 in /home/urbe/anaco...found -- Configuring done -- Generating done -- Build files have...zutil.o [ 16%] Linking C static library libz.a [ 16%] Built target...cpp.o [ 56%] Linking CXX static library libbamtools.a [ 56%] Built...
2108 days ago
