Install Python locally on shared Linux server !
...ome directory, download the python source and extract it mkdir ~/python...n-#2.7.11/python Install pip #Pip is a program used to help us easily insta...ser wget --no-check-certificate https://bootstrap.pypa.io/get-pip.py -O - | py...2108 days ago
Perl script to extract sequence by Ids from multifasta file !
#!/usr/bin/perl -w use strict; my $idsfile = "$ARGV[0]"; my $seqfile = "$ARGV[1]"; my %ids = (); open FILE, $idsfile; while() { chomp; $ids{$_} +=...2106 days ago
Installing Busco version 4.0.6
...3.6 MB conda-forge gfortran_impl_linux-64-7.3.0| h...9.4 MB conda-forge gfortran_linux-64-7.3.0 | h55...2.4 MB conda-forge r-crayon-1.3.4 | r36h61...text-0.19.8.1-hc5be6a0_1002 gfortran_impl_lin~ conda-forge/linux-...1463 days ago
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Perl script to extract a sequence from multifasta with range !
# filterfastarange.pl #!/usr/bin/perl use strict; use warnings; #perl filterfastarange.pl 301 600 contigs.fasta >...ta my $minlen = shift or die "Error: `minlen` parameter not provided\n"; my $ma...2076 days ago
Perl script to break the contigs by 'N'
...d" indicating that start and #the end of the NNNNN region in the contig my @regions=(); my @bases=split //,$seq; push(@bases,"E"); #This extra position marks the end of the...2073 days ago
2070 days ago
#Install older version of R Packages !
#Install older version of R Packages ! require(devtools) install_version("IdeoViz", version = "0.9.1", repos = "http://cran.us.r-project.org")2070 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2065 days ago