Unicycler: Hybrid assembly pipeline for bacterial genomes
...here it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best p...2382 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset o...2369 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequenc...2070 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...; they are essentially made of stitched-together pieces of long reads. Racon is a great polishing too.... That's where Minipolish comes in. With a single command, it will use Racon to polish up a miniasm assemb...1629 days ago