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Public Databases for Bioinformatics !
...t/ grit/lib/multiprocessing_utils.py) import os import time import random import multiprocessing...ble_obj.close() def worker(queue, ofp): # Try without this random.seed() while True:...1139 days ago
- ...ty data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spli...
2979 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...romosomal) for neutral markers (e.g. SNPs) and loci under selection (QTLs, deleterious mutations, DMIs) can now be specified explicitly, or set at random. The map can hold an unlimite...2773 days ago
- ...Displaying and describing data Modeling distributions of data Describing relationships in quantitative data Designing studies Probability Random variables Sampling distribut...
2735 days ago
- ...ta properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spli...
2694 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast...
2693 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produc...2538 days ago
Seal: SEquence ALignment evaluation suite
...ng an artificial reference genome based on input parameters (length, repeat count, repeat length, repeat variability rate). Simulating reads from random locations in the genome based...2314 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for...1620 days ago
Kmer: a suite of tools for DNA sequence analysis
...LEAFF: LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it...991 days ago
