Public Databases for Bioinformatics !
...t/ grit/lib/multiprocessing_utils.py) import os import time import random import multiprocessing...ble_obj.close() def worker(queue, ofp): # Try without this random.seed() while True:...1158 days ago
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
...romosomal) for neutral markers (e.g. SNPs) and loci under selection (QTLs, deleterious mutations, DMIs) can now be specified explicitly, or set at random. The map can hold an unlimite...2792 days ago
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Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produc...2557 days ago
Seal: SEquence ALignment evaluation suite
...ng an artificial reference genome based on input parameters (length, repeat count, repeat length, repeat variability rate). Simulating reads from random locations in the genome based...2333 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for...1639 days ago
Kmer: a suite of tools for DNA sequence analysis
...LEAFF: LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it...1010 days ago