Software packages for next gen sequence analysis
...X. * SHORE - SHORE, for Short Read, is a mapping and analysis pi...per - GenomeMapper is a short read mapping tool designed for acc...d-end and single-end Illumina reads. Uses a Needleman-Wunsch alg...brid de-novo assemblies using reads gathered through 454 sequenc...3243 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...and interactive, publication ready visualizations Supports all...sequencing Input: files with read alignment can be SOAP or SAM...- predicts indels, uses split read alignment profiles, validated...ut: CRAVAT report- MS Excel spreadsheet or tab-separated file (e...2909 days ago
Tools for Searching Repeats And Palindromic Sequences
...enetic palindromes it does not matter whether the nucleic acid strand is read starting from the 3' (three p...CTAACGT 5'. With palindromes the sequences on the complimentary strands read the same in either direction....2211 days ago
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Genome Assembly Tools and Software - PART1 !!
...lts by only considering those reads which should assemble togeth...sing Reference and Paired-end Reads misFinder is a tool that...Minia 2.0.3 – Short-read Assembler based on a de Bruij...of non-chimeric contigs from read data that has been sequenced...2686 days ago
Source Code and Pseudo Code !!
...1 putchar first char of string to screen set read character to hold character While next character read != blanks and white space...n your pseudocode and source code too. It really hels the readability of the text.Source Cod...2659 days ago
Perl Special Vars Quick Reference
...al use: \0 separated Input / Output layer information. ${^UNICODE} Read-only Unicode settings. $...use only: Useful to implement scoped pragmas. ${^TAINT} Taint mode read-only flag. ${^WIN32_SLOP...2644 days ago
Quick next generation sequencing (NGS) terms definition
...WGS protocol generates paired-end reads from both ends of longer fra...max]. Most (>90%) of paired-end reads are sampled from no-SV regio...WGS data set separately.concordant reads: a read pair is called...hat, by definition, the discordant read pairs signal potential SVs. T...2522 days ago