Results for "Read"
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Installing Bio::SCF perl module
...64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.cgcc -O3 -D_LARGEFILE64_SOURC...ctly look for a library named "libread". jitendra@jitendra-UNLOCK-I.... -I. -I.. -I.. -I../include -I../read -I../alf -I../abi -I../ctf -I...c -fPIC -o scf_dump scf_dump.o ../read/libread.a -lz -lm ../read/lib...2218 days ago
- ...list in a text file: cat file_list.txt | while read line; do cp "$line" complete_...it bam files into sets with mapped and unmapped reads: samtools view -F4 sample.b...eaders: cut -d' ' -f1 < your_file To count reads in a all .fastq.gz files in...
2217 days ago
- ...y python-nose[sudo] password for urbe: Reading package lists... DoneBuilding dependency tree Reading state information... DoneT...sly unselected package python-pymysql.(Reading database ... 435155 files...', mode 'w' at 0x7f85d1de31e0>, longreads=[], mapq=10, mem=16, minLeng...
2190 days ago
Parallel Processing with Perl !
...s analysis. One best way is using perl threads and forks. Knowing how these threads and forks work is very impor...ined towards using perl fork than perl threads. One of the oldest way to f...nager($max_processors);while (my $file = readdir(DIRECTORY)) { ### read the...2080 days ago
- ...used unzip blatSrc35.zip to unpack the archive. This gives a directory blatSrc now move into that directory. #cd blatSrc before you begin read the README file that comes with the so...
2063 days ago
- ...er-id/elgg/alpha/You'll have a screen which includes this message: Welcome Installing Elgg has 6 simple steps and reading this welcome is the first one! If you haven't already, read through the installati...
892 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You ca...we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reverse reads Assemble Run Spades:...825 days ago
- Short Read Simulators With the populari...(NGS) technologies, many NGS read simulators have been develope...ly, many of the popular short read simulators are designed to si...below are some popular short read simulators. Links to their pu...tly, many of the popular long read simulators are designed to si...
583 days ago
Bioinformatics tools for genome assembly !
...ruijn graph-based assembler optimized for short-read sequencing data. SOAPden...Bruijn graph-based assembler designed for short reads, widely used for assembling...ead (SPAdesLR): An extension of SPAdes for long-read data, such as those from PacB...286 days ago
Mitochondrial genome assembly tools !
...s and annotate mitochondrial genes from trimmed read sequencing data. MitoHiFi: a...drial genome assembly from PacBio high fidelity reads MITObim: MITObim is a tool...extend algorithm and is suitable for both short-read and long-read data. MITOS2:...242 days ago
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