Results for "Read-Depth"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological programmer or bioinformaticia...3955 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bio...3712 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3914 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add your...3492 days ago
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Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3910 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the followi...
2156 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can...3952 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I d...
3925 days ago
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Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a recipe for baking a cake is an algorithm. Most program...
3951 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can experience new things that we would not normally be able to experience. It is proved tha...3922 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are tod...3901 days ago
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is aroun...3912 days ago
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Opportunity posts
Postodoc in Computational/Systems Biology and Machine Learning
One profile of Computational/Systems Biology and Machine Learning at Postdoc level is needed at the Laboratory of Immunobiology of Neurological Disorders led by Cinthia F...3683 days ago
Project Assistant Position at JMI
Project Assistant Position (@ Rs.10,000/pm Fixed) is available for one year ina research project funded by the Department of Science and Technology entitled, "Folding and...3528 days ago
- +14 more Opportunity posts
ResearchLabs posts
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haussler at UCSC we developed the so-called profile HMMs (re...
3874 days ago
- ...ariety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects delet...
2997 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on Per...3923 days ago
You can't install David Brownlee ;-)
By mistake I ask cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read '/h...1835 days ago
Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a research field called bioinformatics. In this new field, c...3921 days ago
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson, Crick and Franklin described the structure of the mole...3911 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import r...1140 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #...1106 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest...2366 days ago
Tags
- SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for multiple samples. It can work for >= 2 samples, but we suggest that users should use >= 5 samples as in the work ...
Tags: SRBreak, Read-Depth, Split-Read, Framework, Breakpoints, Copy-Number, Variable, Regions
2186 days ago
Comments
Comment on "A quick guide to Phred scaling"
Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is used to quantify the probability of an error in e...420 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome asse...420 days ago
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