MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms...2201 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...e the following reference:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads." bioRxiv (2017): 125534.2197 days ago
2197 days ago
LAMSA: fast split read alignment with long approximate matches
...based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs...2197 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...ol for assembling haplotypes from DNA sequence reads, designed to "just work" with...es, including but not limited to: NGS short reads (Illumina HiSeq) clone-based...clones) SMRT reads (PacBio) Oxford Nanopore reads 10X Genomics Linked-Reads p...2196 days ago
TULIP - The Uncorrected Long read Integration Pipeline
...ntended as prototypes, and additional components and/or implementations are likely to follow. Tulipseed takes as input alignments files of long reads to sparse short seeds, and ou...2196 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
...rks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...2196 days ago
Hapsembler: An Assembler for Highly Polymorphic Genomes
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/2190 days ago
2188 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa...itude faster. It require only 2 minutes aligning one million single-end reads onto the human reference geno...2188 days ago