Synteny and Rearrangement Identifier (SyRI)
...tifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, translocations,...variations (SNPs, indels, CNVs etc) within syntenic and structural rearrangements, and un-aligned regions....1461 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variatio...1449 days ago
Sibelia: A comparative genomics tool
...ments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains...regions that present in one group of genomes but not in others, (3) rearrangements that transform one genome to...1352 days ago
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReCon...143 days ago