Tags: Bioinformatics, Computational Biology, Svelter, Rearrangement
2989 days ago
Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint
2989 days ago
Tags: Bioinformatics, COSMIC, Chromosome, Cancer, Rearrangement, Breakpoints
2774 days ago
Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon
2754 days ago
Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment
1972 days ago
Synteny and Rearrangement Identifier (SyRI)
SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear ...Tags: Synteny, Rearrangement, Identifier, SyRI, Genome, Comparative, Genomics
1462 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite
1450 days ago
Tags: Chromosomal, rearrangement, events, abnormal, breaking, DNA, SLIDESORT-BPR
2359 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.Tags: SVfinder, Tool, detecting, genomic, rearrangement, DNA-seq
2335 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset with a sequencing depth of 100×, it finds ∼88% of the bre...Tags: Reference-free, prediction, rearrangement, breakpoint, reads
2251 days ago