Results for "Reference"
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mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps...2931 days ago
- segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthe...
2917 days ago
Hagfish - assess an assembly through creative use of coverage plots
...control of de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires a reference sequence and a paired en...2906 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can a...2906 days ago
- ...r the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for...g of reads containing that contain sequence variation relative to the reference, in particular for those cont...
2906 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on pri...2880 days ago
- ...e-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequen...rity and protein sequence conservation. Users should consult the references cited below for a compl...
2874 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphi...
2873 days ago
- ...ication of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial...
2869 days ago
Bioinformatics tools and software
...cterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS >Whole-genome alignment. PREFAB >Protein Reference Alignment Database. MSA...2861 days ago
