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Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3919 days ago
- ...or one and all, BioNumbers (the database of key numbers in molecular biology) was created. Along with the numbers, you'll find the relevant references to the original literature, u...
3917 days ago
- ...DarkHorse is configurable for varying degrees of phylogenetic granularity and protein sequence conservation. Users should consult the references cited below for a comple...
2883 days ago
AVID: A Global Alignment Program
...for future studies. The tools we have developed for the alignment comparisons, as well as the AVID program, are publicly available. See Web Site References section for AVID Web address...2547 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...ng Hi-C yields chromosome-length scaffolds. Science, 2017. Unless otherwise noted, all terminology below is consistent with this paper, and all references to figures and tables in this...2329 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and...2260 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using A...2219 days ago
- ...to use this service. Development of TAREAN was supported by ELIXIR CZ research infrastructure project (MEYS Grant No: LM2015047). References Novak, P., Avila Robledillo,...
2191 days ago
GFinisher: a new strategy to refine and finish bacterial genome assemblies
...ization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. java -Xms2G -Xmx4G -jar Gen...2119 days ago
