Jit
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GFinisher: a new strategy to refine and finish bacterial genome assemblies
By Jit 2103 days ago
http://gfinisher.sourceforge.net
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references.
java -Xms2G -Xmx4G -jar GenomeFinisher.jar \
-i target_contigs.fasta \
-ds alternative_assemblies.fasta -ref reference.fasta \
-o outputDirectory