Computer simulation of genetic mechanism !!
..., dynamic models. Similarly, it is not meant to provide any coverage of the breadth of applications; however, for interested readers, we provide references to use as a possible starting...2984 days ago
List of genome announcement, notes and reporting journals
...for ‘Acknowledgments’ and ‘References’. Cannot include figure...ce, a table summarizing the genome features, References and an Acknowledgement. Figur...that are missing key figures, tables and/or references (as per the guidelines) will...2017 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3919 days ago
3917 days ago
Genome Assembly Tools and Software - PART2 !!
...iteratively decomposing the assembly problem into sub-problems. AlignGraph – Secondary de novo Genome Assembly guided by closely related ReferencesAlignGraph is a software...2694 days ago
3956 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
....com/p/treesimj/Vortex VORTEX is an individual-based simulation model for population viability analysis (PVA). http://www.vortex9.org/vortex.htmlReferences: Image www.evolution-of-life...3746 days ago
2898 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
..., please refer to our website: http://www.unil.ch/cig/page7858_en.html Please submit a CV, statement of research interest, and names of three references to: Henrik Kaessmann (Henrik....3927 days ago
Pre- or postdoctoral research fellowship in Structural Bioinformatics in Padova
...rch visits abroad may be provided. To apply, please send your CV, a brief description of your research background and the names of two (or more) references to Prof. Silvio Tosatto (Emai...3876 days ago
2135 days ago
2084 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and orient the contigs of a draft genome. In practic...Tags: Multi-CAR, tool, contig, scaffolding, multiple, references
2260 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa --genome genome.fa --distanceLow distanceLow --...Tags: AlignGraph, algorithm, secondary, de novo, genome, assembly, guided, references
2218 days ago
Comment on "Sibelia: A comparative genomics tool"
...s <integer> Maximum number of iterations during a stage of simplification. Increasing this parameter may slightly improve coverage. References ========== 1. Ilya Minkin,...1294 days ago