Results for "Regions"
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ACANA: An accurate and consistent alignment tool for DNA sequences
...igned for aligning sequences that share only some moderately conserved regions and/or have a high frequency...d global alignments algorithms in searching for evolutionarily related regions of sequences in order to achi...2341 days ago
Mugsy: multiple whole genome alignment tool
...a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear regions, and the segment-based progre...2339 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format...2309 days ago
Dot, an interactive viewer for genome-genome comparison
...ed DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enables Dot to read in more alignments in certain regions on demand. Dot, an interacti...2302 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates base...2214 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements...2163 days ago
- ...nsions due to sequencing errors or repeats by using looking ahead technology, and it also try to separate the different repeats of nearby genomic regions to make the assembly result m...
2160 days ago
BEAP: Blast Extension and Assembly Program
..."extend" the length of the original sequence for constructing a "full length" sequence for functional analysis, or at least to obtain neighboring regions of the segment for SNP discov...2154 days ago
- ...sifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achievi...
2154 days ago
- SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to...
2181 days ago
