Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2018 days ago
QUAST-LG: Versatile genome assembly evaluation
...and computes relevant quality metrics. Since genomes generally cannot be reconstructed completely due to complex repeat patterns and low coverage regions, we introduce a concept of up...2018 days ago
2007 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function f...framework. With it, it's possible to study the association of a set of regions with other sets of regions, f...1971 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
...mbines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies genomic regions into five copy number states....1947 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
...n MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologous regions) of the new program are not m...1924 days ago
HumCFS: a database of fragile sites in human chromosomes
...n increased frequency of chromosdomal breakge when cells are exposed to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line of eviden...1839 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; e...1799 days ago
gEVAL: Genome Evaluation Browser
...ugh its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing po...1782 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents...in its traditional role sorting out a big mess of overlapping or similar regions....1712 days ago