Results for "Regular Expression"
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You are requested to please bookmark collection of bioinformatics tools, scripts, cod...WGS), transcriptome sequencing (whole cDNA sequencing, RNA-seq), digital gene expression sequencing (Tag-Seq), ChIP-Se...3232 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents kno...scovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets (microarray or RNA-S...2929 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. prom...locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies...
2867 days ago
- CSBB is a command line based bioinformatics suite to analyze biological da...n analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-scores when comparing ex...
2865 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and pow...he analysis of miRNA (or more generall short RNA) expression using short-read deep sequenc...fferent mappers, create differential gene (miRNA) expression profiles and cluster reads us...
2767 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal w...2753 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary change...
2751 days ago
- This website and accompaning documents are intended as a tool to help researchers dea...aration and computer setup, through addressing biological questions with gene expression and SNP data. http://sfg.sta...
2587 days ago
- UpSetR generates static UpSet plots. The UpSet technique visualizes set intersec...ioVenn (Hulsen et al., 2008) and jvenn (Bardou et al., 2014) "Expression" takes the input used by the...
2576 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization too...SNPs and indels between closely-related strains or serovars. Comparing gene expression values across multiple sample...
2503 days ago
