Tags: data compression, genomics, sequencing, redundancy, repeats, bam, sff, gz, zip
3933 days ago
Tags: adaptation, genome, fly, repeats, transposable, elements
1004 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often used as genetic markers and are important in many areas of genetics and genomics research. Here are some methods for discovering tandem repeats in genomes: T...Tags: Tandem, repeats, DNA, sequences, find, methods
437 days ago
Skills: Programming (Python, Linux, Bash, R), Computational Biology, NGS technologies, WGS, RNA Seq, Repeats, Variant Calling
1153 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later characterized and placed into five categories: Simple...Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software
2225 days ago
Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome
2830 days ago
Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome
2830 days ago