AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory ef...on for AVID Web address and Web addresses for other programs discussed in this paper.2551 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262535 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produ...ative Medicine / Institute for Stem Cell Research, University of Edinburgh...and has benefited from funding by the Medical Resea...2509 days ago
LIBSVM -- A Library for Support Vector Machines
...ince version 2.8, it implements an SMO-type algorithm proposed in this paper:R.-E. Fan, P.-H. Chen, and C.-J....second order information for training SVM. Journal of Machine Learning Research 6, 1889-1918, 2005. You ca...2481 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combi...Rapid identification of taxonomic assignments. Accepted to Nucleic Acids Resea...2364 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possi...ogram is Microsoft XL table and publish-ready idiogram picture." Find their paper openly published with us at:&...2364 days ago
Foldit: Solve Puzzles for Science
Foldit is an online puzzle video game about protein folding. It is part of an experimental resea...2340 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-...oted, all terminology below is consistent with this paper, and all references to figures and tables in this readme refer to this paper. Specifically, some of the te...2333 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Op...://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org...An ipython notebook to reproduce results in the paper can be found in this rep...2292 days ago
An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab&n...on the courses I teach on my teaching website and information on my resea...2269 days ago