Structural variation: the hidden genomic treasure
...ed as chromosomal rearrangements larger than 1kb, but due to a higher resolution of new detection methods, sma...r annotation, classification and analysis of SVs at single nucleotide resolution.2010 PEMera computational an...2696 days ago
Software and Tools to detect structure variation with long reads !!
...s at the sequence level to unravel the genetic etiology of disease Resolve structural variation across the complete size spectrum with basepair resolution Following are the SV tools...2601 days ago
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Genome Assembly Tools and Software - PART2 !!
...sing an array of hash lengths, a dynamic filtering of noise, a robust resolution of alternative splicing event...a contig digraph. rectangles 2.0 – Rectangle Graph for Repeat Resolution in Genome Assemblyrectangles&...2679 days ago
Commercial and public next-gen-seq (NGS) software
...e sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. M...3512 days ago
Software packages for next gen sequence analysis
...e sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. M...3236 days ago
Atlas of ancient inter-ethnic group !!!
...ixing over time or between multiple groups can be difficult to tease apart. But it is believed that larger sample sizes will improve resolution. These high resolution will provide a deeper underst...3726 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...hat allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology allows obtaining high resolution digital snapshots of gene exp...3909 days ago
Postdoctoral Position (Bioinformatics/Computational Biology)
...hat allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology allows obtaining high resolution digital snapshots of gene exp...3790 days ago
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Perl script to run SATSUMA in loop !
...edAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # Location of ur SATSUMA my $maxSize = 5000; my $resolution = 5000; my $dotsize = 1; my...2133 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current SPAdes distribution, we're also releasing the Rectangle Graph Module (RGM) as the separate code which can be run inde...Tags: Rectangle, Graph, Repeat, Resolution, Genome, Assembly
2313 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython notebook to reproduce results in the paper can be found in thi...Tags: HINGE, Long-Read, Assembly, Achieves, Optimal, Repeat, Resolution
2272 days ago