Results for "Rules"
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...in particular), we have large number of blocks that are not orthologous, but are paralogous. This has forced us sometimes to use ad-hoc rules to screen these blocks. So th...2463 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
...ate a genome for submission to NCBI GenBank. Existing tools (such as Maker) require significant manually editing to comply with GenBank submission rules, thus funannotate is aimed at...2048 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to...2033 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam rules. These contigs are then immed...1924 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...elines dedicated to NGS in the form of Snakefiles (Makefile-like with Python syntax based on snakemake framework) with more than 80 re-usable rules (see Rules). Original tools to help in...1537 days ago
SvABA: Structural variation and indel detection by local assembly
...clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam rules. These contigs are then immed...1510 days ago
The Snakemake Wrappers repository
The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappers983 days ago
Understanding pango networks !
...t Pango lineage names and designations will conform to the following rules. These rules also act as guidelines for th...ango.network/the-pango-nomenclature-system/statement-of-nomenclature-rules/ https://www.pango.network/h...925 days ago
Fix rewritable error of ELGG !
...URL, or to invoke an internal proxy fetch. mod_rewrite provides a flexible and powerful way to manipulate URLs using an unlimited number of rules. Each rule can have an unlimi...895 days ago
- All the rules to classify a Lineage ! https://www.pango.network/the-pango-nomenclature-system/statement-of-nomenclature-rules/
866 days ago
