Results for "Run"
Bio-Scripts
...L service will start automatically. To check whether the MySQL server is running, type: sudo systemctl status mysql #To secure MySQL #Run the script by typing: sudo m...915 days ago
Install Php on Ubuntu / Apache server !
#Installing PHP 7.2 with Apache #If you are using Apache as your web server to install PHP and Apache PHP module run the following command: sudo apt install php libapache2-mod-php #Once the packages are installed restart the Apache service: sudo systemctl restart apache2915 days ago
Rules to run fastp / Snakemake !
rule fastp: input: fwd=INPUT + "/{sample}-read_1.fq", rev=INPUT + "/{sample}-read_2.fq" output: fwd=RESULTS + "/fastq_trimmed/{sa...897 days ago
Run Pango on your multifasta file !
...va_all_samples_combined.fa All dependencies satisfied. The query file is:/home/jnarayan/RF_DATA/FASTA/Input_for_Cova_all_samples_combined.fa ** Running sequence QC ** Number of...883 days ago
- #To update the linux OS -- run the following sudo -- sh -c 'apt-get update; apt-get upgrade -y; apt-get dist-upgrade -y; apt-get autoremove -y; apt-get autoclean -y' #OR sudo apt-get update && sudo apt-get upgrade
856 days ago
- ...er packages from the command line to make installing additional packages easier. We’ve commented out the code below, however it is exactly what was run to set up the R we will be us...
819 days ago
- ...ATK from github. The creators of GATK recommend running GATK through conda which...lly creates a virtual environment from which to run software. The next step then...d is available directly from our bin folder. To run GATK we must first start up t...
807 days ago
- #Commands to run PERF PERF --format fasta -t 30 -i reference.fasta -o PERF_output.tsv --include-atomic -m 2 -M 7 -l 12
787 days ago
Perl script to find inverted repeats !
...n/perl use strict; use warnings; use Bio::SeqIO; use Bio::Tools::Run::RepeatMasker; my $genome_...sta"); my $seqobj = $seqio->next_seq(); my $seq = $seqobj->seq(); # run RepeatMasker my $rm = Bio::T...421 days ago
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