Results for "SAM%20tool"
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Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the...1277 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable or...1278 days ago
- This a list of available commands with their brief description. ...
1514 days ago
Comment on "Learn Genetics Online"
This is one of the best interative genomics tutorial that I found useful. Have a look https://lab.concord.org/embeddable.html#interactives/sam/DNA-to-proteins/1-dna-to-protein.json1552 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len...2116 days ago
- AfterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provides...
2131 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Here’s the quick and dirty of what was done: 1 Run minimap: This uses a pre-built set of defaults (the ava-pb in the code below) for analyzing PacBio da...2161 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 201...2286 days ago
- SAM file description https://samtools.github.io/hts-specs/SAMv1.pdf
2860 days ago
- SAM flags https://gist.github.com/davfre/8596159
2860 days ago
