Results for "SAM tool"
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Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud
InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to...ows an accurate search across all functions, tools and pipelines. With InsideD...ith a powerful compute instance, without any tool installation or set up hassle...3175 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacter...s FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for...2544 days ago
- A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot
3009 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as inpu...
3002 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different ass...<> mm10 (GRCm38)). It supports most commonly used file formats including SAM/...
3002 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Geno...ts, variation etc.), as well as specialized tool sets for various analyses. It...e synteny; Papaya, an all-purpose alignment tool for less diverged sequences;...
3002 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages convers...PI for NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.ncbi.nlm.nih.gov/genome/tools/remap/docs/api
3000 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned...be integrated into existing workflows or combined with alternative tools. More at http://bmcbioinfor...
2999 days ago
- Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
2981 days ago
- Picard is a set of command line tools for manipulating high-throughp...ing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file...ecs repository. See especially the SAM specification and the VCF spec...e available on GitHub. The Picard toolkit is open-source under the M...
2922 days ago
