Results for "SAM tool"
Top-level pages
Next generation sequencing in R or bioconductor environment
...ke GenomicRanges, ShortRead, Rsamtools, etc. Documentation Ge...ackages including ShortRead, Rsamtools, rtracklayer, GenomicFeatur...lumina reads. Documentation Rsamtools Rsamtools provides function...t data in BAM format (via Rsamtools) and associating them with g...3617 days ago
Commercial and public next-gen-seq (NGS) software
...visualization and statistics tool from SAS. They are working with NCGR to refine this tool and produce others. NextGENe...Sen University, China. Linux. SAM - Sequence Assembly Manager. W...MapNext - MapNext: A software tool for spliced and unspliced ali...3511 days ago
- Since few years miRNA has shown to play important role i...ranscription levels. Here are some important DBs and tools related with miRNA: miRNA Sequencing data analysis : http://tools.genxpro.net/omiras/ miRNApa...
3488 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad...files - ab1. It includes handy tools such as "Reverse Complement"...h other zip apps, and also web-tools like Blast, this app allows...files - ab1. It includes handy tools such as "Reverse Complement"...Pad BioGene is an information tool for biological research. Use...3533 days ago
Software packages for next gen sequence analysis
...visualization and statistics tool from SAS. They are working with NCGR to refine this tool and produce others. * NextGE...nd Wolfgang Gerlach (SWIFT BALSAM) * SXOligoSearch - SXOligoSear...Management and Visualization Tool. It provides a generic platfo...3234 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key...he comprehensive list of visualization tools for biological pathways: Bi...unipax.info/ BioTapestry Interactive tool for building, visualizing and...them http://tinyurl.com/vitapad/ Web tools for pathways ArrayXPath&nbs...2279 days ago
- ...at is a member of the BBMap/BBTools package. It is a multipurpose tool designed for converting read...vert: fastq fasta fasta+qual sam scarf (an old Illumina format) bam (if samtools is installed) gzip zip ascii...rmat can be downloaded with BBTools here: https://sourceforge.ne...
2706 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Se...iles must be indexed using Samtools or similar program Output:...ntegrates read tallies to the sample level and to the tumor-norm...Description: command-line tool, supports SNPs, INDELs, CNVs...2901 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Cl... GeneSCF serves as command line tool for clustering the list of ge...of using GeneSCF over other enrichment tools is that, it performs enrichm...tabases. With command-line versions of tools, as you know you can run mul...2864 days ago
- ...information is stored in the SAM or BAM file formats. bcftools: a set of companion tools, currently bundled with SAMtools, for identifying and fil...line utility decodes a single SAM flag value into plain English....ome. See also BAM Format. SAMtools: widely used, open source co...
2861 days ago
