Genome Assembly Tools and Software - PART1 !!
...cs software for automatic DNA sequence assembly , DNA sequence analy...retains long deletions, novel sequence insertions, translocations an...FGAP aims to improve genome sequences by merging alternative assem...pressed representation of DNA sequence reads. r2cat – Syn...2700 days ago
Source Code and Pseudo Code !!
...in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally "sequence," "selection, " "iteration,"...2673 days ago
Quick next generation sequencing (NGS) terms definition
...bsp;briefly, any non-concordant read pair is considered discordant. Note that, by definition, the discordant read pairs signal potential SVs. The sequence signature produced by these t...2536 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...lysis, which depicts a hypothetical branching sequence of lineages leading to the ta...terminal points of the cladogram. expressed sequence tag (EST) -- A partial coding...y do with any other clade. repetitive DNA -- Sequences of DNA that are found to be...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...soform abundances from reference sequences and RNA-seq data (k-mer base...P variants directly from raw NGS sequence reads by counting unique ...embly with error-containing long sequence (e.g., ONT or PacBio reads, d...n NGS reads using alignment-free sequence dissimilarity measures d2* an...2385 days ago
Tools for bacterial whole genome annotation
..., pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobil...cbrc.kaust.edu.sa/BEACON/. BlastKOLA: Assigns K numbers to the user's sequence data by BLAST searches, respe...2346 days ago
2319 days ago
List of visualization tools for network biology
...nbsp; 2D/3D network visualization http://www.biolayout.org/ BiologicalNetworks Efficient integrated multi-level analysis of microarray, sequence, regulatory and other data h...2302 days ago
List of visualization tools for genome alignments
...novel graph-based representation to display a sequence assembly and associated metad...annotation tool that allows visualization of sequence features, next-generation seq...utes alignments of similar regions in two DNA sequences. The resulting alignments ar...2298 days ago
Awk for Bioinformatician and computational biologist
...ons after reading the file } For example,$ awk 'BEGIN{print "Header,Sequence"}{print $1","$2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig1,ACTGTCTGTCACTGTGTTGTGA...2294 days ago