Results for "SGA"
Blogs
String graph based genome assembly software and tools !
...ng are the genome assembly tools based on string graph: 1.SGA (String Graph Assembler) https://github.com/jts/sga Assembles large genomes from...that fast string graph (FSG) is significantly faster than SGA while maintaining a moderate...2329 days ago
Bookmarks
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficien...DNA sequence reads. More at https://github.com/jts/sga SGA dependencies: -google sp...
2705 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...d for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler)...1931 days ago
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Files
Evaluation of genome assembly software based on long reads
...mes and the results evaluated with the QUAST software. The 11 software that have been evaluated are: Celera Assembler , Falcon , Miniasm, Newbler , SGA Assembler, Smartdenovo, Abrui...1920 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...e genomes using compressed data structures. Simpson & Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a human gen...3780 days ago
Genome Assembly Tools and Software - PART1 !!
...ti-step bi-directed graph (MSG). With MSG, the standard genome assembly (SGA) is equivalent to the edge me...equences that can be used to characterize novel sequencing targets. SGA 0.10.14 – String Graph...2686 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...d for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler)...1512 days ago
Tags
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More at https://github.com/jts/sga SGA dependencies: -google sparse hash library (http://...
Tags: Bioinformatics, Analysis, Assembly, Genome, SGA, NGS
2705 days ago
