2073 days ago
1602 days ago
Samtools commands for bioinformatician !
...e # -f : use reference genome given samtools mpileup -g -f sal_ref_sej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find snp # -v : output only potential...1600 days ago
Create random 10000 SNPs in genome !
..../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021]...ck specified options .. Running simuG for SNP/INDEL simulation >> Ignore a...n Jan 10 16:05:57 2021] Introducing random SNPs based on the following param...1208 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -pre...Sun Jan 10 16:14:00 2021] Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore a...1208 days ago