Results for "SNPs"
Blogs
Computer simulation of genetic mechanism !!
...GenomePop2 is a specialization of the program GenomePop just to manage SNPs under more flexible and usefu...roductive Tactic for Populations http://smartpop.sourceforge.net/ SNPsim Coalescent simulation...2989 days ago
Structural variation: the hidden genomic treasure
...on between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural...ons (CNVs) are a major source of genomic variation. However, compared to SNPs, accurate detection, genotypi...2717 days ago
- +5 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...nd genotyping using next-generation DNA sequencing data PubMed: 21478889 SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine div...3501 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorp...
2887 days ago
- +20 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy i...and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was prepared after filtering...3803 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...otype-specific Genome Assembly ToolkitHapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphi...2700 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...mer software for full-genome alignment & comparisons] Searching for SNPs with cloud computing. Langmead et al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequence....3793 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...2 GenomePop2 is a specialization of the program GenomePop just to manage SNPs under more flexible and usefu...oods and instantaneous rate matrices. http://www.cibiv.at/software/sissi/SNPsim Coalescent simulation of ho...3751 days ago
- +9 more Top-level pages
News
High Density Sheep SNP Genotyping Chip released!!!
...vineSNP50 BeadChip features over 54,241 evenly spaced probes that target SNPs, offering more than sufficien...54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More than 18,000 of these m...3911 days ago
- ...nd analysis of genetic variants such as single nucleotide polymorphisms (SNPs) and InDels. The webinar show...somatic mutations. This is a simple workflow for selection of homozygous SNPs from Variant Call Format (VCF...
2377 days ago
Opportunity posts
Visiting Scientist - Computational Genomics (two positions)
...ext generation sequencing DNA and RNA data Data mining and development of pipelines and troubleshooting Genome diversity analysis such as SNPs, Indels, Structural Variation...3603 days ago
Internship in Computational Biology
...e allowing us to identify the genomic origin of expressed genes. To do that, the intern will have to analyze expression data (from RNA-seq) to find SNPs on the sequenced mRNAs allowi...3545 days ago
- +1 more Opportunity posts
Bio-Scripts
- ...Tools that perform variant calling and genotyping for short variants (SNPs, SNVs and Indels) Combin...peCaller HaplotypeCaller Call germline SNPs and indels via local re-assem...
2089 days ago
Create random 10000 SNPs in genome !
...has been specified: snp_count = 10000 The option titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parame...1225 days ago
Tags
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors...
Tags: Bioinformatics, NGS, Reads, Silulator, INDEL, SNPs, Simulation
2887 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s computer/browser. VCF2PopTree is compatible with all population browsers including Chrome, Opera, Edge and Firefox and works equally efficient in Mac, Windows and Linux (Ubuntu). Fu...Tags: VCF2PopTree, client-side, software, construct, population, phylogeny, genome-wide, SNPs
876 days ago
Comments
Comment on "Bioinformatics approach to Boar Taint"
...g/archive/conferences/iscb/cms_addon/conferences/ismbeccb2011/posterlistd227.html?cat=U PAG 2013Application of Whole Genome Resequencing to Detect SNPs for Selection Against Boar Ta...3932 days ago
