BOL: Results for "SSPACE-LongRead"

Results for "SSPACE-LongRead"

- biogeek@biogeek
Bioinformatics tools developed for Oxford Nanopore data analysis !
...sis and visualization software https://github.com/arq5x/poretools SSPACE-LongReadGenome scaffolding tool http://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread SMISGenome scaffolding tool...
2334 days ago

- Jit@jit.aber
SSPACE
SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the...
2571 days ago
- Rahul Nayak@rahul
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance...
1577 days ago
+2 more Bookmarks

- Jit@jit.aber
Download blasr 1.3 version
...-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr -nproc 40 -m 1 -mi.../ /\t/g' > FALCON-Unzip-Scaff.mapsh: 1: /home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr: Permission denied...
2165 days ago

- Jit@jit.aber
Some useful Bioinformatics links
...eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacterial draft...
2255 days ago
- Rahul Nayak@rahul
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward...
2179 days ago

- Abhimanyu Singh@abhimanyu
#SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic
2056 days ago

- Jit@jit.aber
Run sspace !
#!/bin/bash cd `pwd` perl ~/apps/SSPACE-1.2_linux-x86_64/SSPACE_v1-2.pl \ -l libraries.txt \ -s Contigs_over200_nocp.fasta \ -k 5 \ -a 0.7 \ -x 1 \ -m 30 \ -o 20 \ -b Rayk31_scaffolds_extension
1737 days ago