BOL: Results for "SSPACE-Longreads"

Results for "SSPACE-Longreads"

- biogeek@biogeek
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generate 10–20 Gb of DNA sequence data. Ultra...
2328 days ago

- Jit@jit.aber
SSPACE
SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the s...
2564 days ago
- Rahul Nayak@rahul
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance o...
1570 days ago
+1 more Bookmarks

- Jit@jit.aber
Download blasr 1.3 version
DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following...
2158 days ago
- Jit@jit.aber
getopts.pl file
SSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)
2158 days ago

- Jit@jit.aber
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference...
2249 days ago
- Jit@jit.aber
Installing python-numpy !
$ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-nose[sudo] password for urbe: Reading package l...
2197 days ago
+1 more Top-level pages

- Rahul Agarwal@raag
Live webinar on long reads! http://programs.pacificbiosciences.com/l/1652/2014-06-16/2w46dr #PacBio #LongReads #NGS #Omics #Seq
3609 days ago
- Shruti Paniwala@shruti
Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review
1433 days ago
+4 more Wire posts

- Jit@jit.aber
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont echo -e "This is a bash scrip to map your long reads and make it visua...
2130 days ago
- Jit@jit.aber
Run sspace !
#!/bin/bash cd `pwd` perl ~/apps/SSPACE-1.2_linux-x86_64/SSPACE_v1-2.pl \ -l libraries.txt \ -s Contigs_over200_nocp.fasta \ -k 5 \ -a 0.7 \ -x 1 \ -m 30 \ -o 20 \ -b Rayk31_scaffolds_extension
1730 days ago