Protocol for De novo Genome Assembly using Illumina Reads
...ome assembly http://bioinf.spbau.ru/quastMauve assembly metrics - http://code.google.com/p/ngopt/wiki/How_To_Score_Genome_Assemblies_with_MauveInGAP-SV - https://sites.google.com/si...1197 days ago
Ancient whole genome duplication (WGD) detection tools !
...wgd ksd --n_threads 80 Sspon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.fasta...ture gene --gene_attribute ID \ -ks wgd_ksd/Sspon.v20190103.cds.fasta.ks.tsv \ Sspon.v20190103.gff3 Sspon_...1148 days ago
Bioinformatics tools for telomere to telomere assembly !
...ntial chimeric sequence variants (Yuanyuan Cheng @Yuanyuan929)● svpack – tools for filtering, comparing, and annotating structural variant (SV) calls in VCF format (Aaron W...984 days ago
Basic Structure of Snakemake Pipeline Run !
... snakemake --dry-run bwa Run the snakemake file in order to produce an image of the DAG of jobs to be run. snakemake --dag | dot -Tsvg > dag.svg OR snakemake --dag...927 days ago