3939 days ago
Most Commonly used Awk by Bioinformatician
...print;l[$2]=1}' input.txt count different words (wc): awk '{for(i=1;i!=NF;++i)c[$i]++}END{for (x in c) print x,c[x]}' input.txt deal with simple CSV: awk -F, '{print $1,$2}' su...3906 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevan...3773 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softw...3512 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...lvania Health System University of Pune Uttar Pradesh Technical University VBS Purvanchal University Vidyasagar University Visva-Bharati University Visveswaraiah Technological Univer...2564 days ago
A guide for complete R beginners !
...ng Bioseq group). Presentation quality graphics Save as a png, pdf or svg History What you do...p://bioinformatics.knowledgeblog.org/wp-content/uploads/bioinf/kerr/data.tsv Start R (type R on a Linux o...3355 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq sof...3236 days ago
Comprehensive list of visualization tools for biological pathways
...Web tools for pathways ArrayXPath Mapping and visualizing microarray gene-expression data and integrated biological pathway resources using SVG http://tinyurl.com/ArrayXPa...2280 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...r hg19 genome, Output: vcf.gz, vtf.gz, and baf.tsv.gz output glfMultiples...put: Manta Description: Calls indels and SVs from paired end reads; stand...mat used is a simple tab delimited file (.sft, .tsv) Genome Track Analyzer...2902 days ago
Genome Assembly Tools and Software - PART1 !!
...g phylogenetic tree and then assembles the contigs into scaffolds. laSV 1.0.2 – Local Assembly based Structural Variation Discovery tool laSV is a software that employs a...2679 days ago