Results for "Sequence"
Top-level pages
Some useful Bioinformatics links
....gov/pubmed/24185095 MAFFT ver.7 - a multiple sequence alignment program https://ma....html Measuring the distance between multiple sequence alignments | Bioinformatics |...www.ncbi.nlm.nih.gov/pmc/articles/PMC3921174/ sequence - download.tardigrades.org &g...2241 days ago
- ...{ if (n > 0) print sum / n; }' To get sequence length for all sequences in a fasta file: awk '/^>...s using pigz: pigz *.fastq To count all sequences in a fasta file: grep "^>...To sample only 200 first bases from all sequences in a multifasta file (e.g. f...
2217 days ago
Tools to Predict the Impact of Missense Variants !
...aster‐2 (MT2)“Evaluation of the disease‐causing potential of DNA sequence alterations” MutationA...ations that disrupt highly conserved amino acids within protein‐coding sequences, which are likely to be unco...2203 days ago
Protein-Protein Interaction Sites Predictions !
...odeling of complex structures HotPOINT Prediction of protein interfaces using an empirical model ISIS Prediction of interaction hotspots from sequence KFC server Automated decisi...2202 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection&n...2179 days ago
LINKS scaffolder bloomfilter setting !
...✗ cd .. ➜ bin git:(master) ✗ ./LINKS Usage: ./LINKS [v1.8.6] -f sequences to scaffold (Multi-FASTA format, required) -s file-of-filenames, full path to long sequence reads or MPET pairs [see belo...2151 days ago
Understanding BLASTn output format 6 !
...NA against DNA, for example gene sequences against a reference genomebl...1. qseqid query (e.g., gene) sequence id 2. sseqid subjec...accesion.versionqlen Query sequence lengthsseqid Subject Seq-i...seq Aligned part of subject sequenceevalue Expect valuebitscore...2139 days ago
Bioinformatics Training Courses At RASA LSI
...s are crafted meticulously, covering different modules of courses such as Bioinformatics course, In silico Drug Discovery course, Next Generation Sequence data analysis course, Molecul...1642 days ago
- ...Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repea...h and pattern of the repeated sequence, as well as the presence or a...ATCATGTCGTC", where the "CAT" sequence is repeated three times, foll...
423 days ago
Steps to find all the repeats in the genome !
...ou need to install RepeatMasker on your system. You can download it from the RepeatMasker website[0]. Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file format. Let's...248 days ago
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