Results for "Sequence"
Tags
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and gen...Tags: NanoSim, nanopore, sequence, read, simulator, statistical, characterization
2322 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.c...Tags: Circoletto, visualize, sequence, blast, similarity, Circos
2269 days ago
Unable to index fasta file with samtools !
I am unable to index fasta file with samtools ! It return "different line length in sequence" error message . How to fix it? nc@radha[Downloads] samtools faidx dedup.genome.scf.fasta_assembly.fna [][fai_build_core] different line length in sequence 'jcf7180000001219'.Could not build fai in...Tags: samtools, faidx, index, length, sequence
2243 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two sequences along their entire length. The algori...Tags: Many-to-many, pairwise, alignments, sequence, sets, needleall, Needleman-Wunsch
2139 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study of molecular evolution. The method consists of the synthesis of an ancestral gene and expression of the correspo...Tags: Ancestral, sequence, reconstruction, steps
2171 days ago
- Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structural variant...
Tags: Breakpointer, local, mapping, artifacts, support, sequence, breakpoint, discovery, single-end, reads
2146 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped da...Tags: SeqMonk, tool, visualise, analyse, high, throughput, mapped, sequence, data
2055 days ago
- Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must...
Tags: PANDASEQ, program, align, Illumina, reads, PCR, primers, sequence, reconstruct, overlapping, sequence
2045 days ago
