A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis:...3373 days ago
Software packages for next gen sequence analysis
...ighted tool that aligns short sequences to a sequence database, such...lignment of finished or draft sequence. Released as a package provid...e genomes, and carry out post-analysis. ZOOM is developed to be highl...De Novo and Reference-guided Sequence Assembly of Short Reads. By To...3254 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled...2299 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we... CRESCENDO Identification protein interaction sites. It uses sequence...2214 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...t Software Suite: can upload sequence of BED files Genome browser:...small indels from short-read sequences, only can handle Illumina dat...ED6, GFF; if using prealigned sequence data- use MACS peak caller: BA...; based on different kinds of sequence info and neural networks to pr...2921 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists...and C-Value Paradox ). These sequences were later characterized and...of more complex 100-200 base sequences.Segmental Duplications - Lar...e term palindrome refers to a sequence of nucleotides along a DNA (d...2223 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by...2884 days ago
2881 days ago
Genome Assembly Tools and Software - PART1 !!
...embly accuracy for downstream analysis. It combines the information...FGAP aims to improve genome sequences by merging alternative assem...ard software for DNA sequence analysis. It works with all automated s...pressed representation of DNA sequence reads. r2cat – Synt...2698 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed...ns are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally "sequence,...2671 days ago