Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3582 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3647 days ago
Comment on "R and Bioconductor Tutorial"
...ith R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2] BSGenomes – R...3680 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...ic tree and an evolutionary model).bppAncestor (Reconstruct ancestral sequences).bppConsense (Build consensus...(Sequence manipulation and file format conversion).bppPhySamp (Sample sequences from a file according to a ph...3836 days ago
Comment on "R and Bioconductor Tutorial"
DotPlot for Protein Sequences using R @ http://www.biogem.org/blog/dotplot-for-protein-sequences-using-r/ Frequency Plot for Protein Sequences using R @ http://www.biogem.org/blog/frequency-plot-for-protein-sequences-using-r/3896 days ago
3899 days ago
Comment on "R and Bioconductor Tutorial"
Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. http://www.bioconductor.org/packages/2.12/bioc/html/Biostrings.html3913 days ago
Comment on "R and Bioconductor Tutorial"
I found one R package SeqinR very handy in statistical computing of NGS data. SeqinR 2.0-1: a contributed package to the project for statistical computing devoted to biological sequences retrieval and analysis Link :http://seqinr.r-forge.r-project.org/seqinr_2_0-1.pdf3916 days ago
Comment on "Online Bioinformatics Courses"
...assist in understanding biological information. Genome-scale sequencing projects have led to an explosion of genetic sequences available for automated analysis. These gene sequences are the codes, which direct t...3922 days ago